miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cynodon dactylon, Eragrostis curvula, Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001757
species: Panicum virgatum
miRNA family: MIRf89
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCTTTAGTCCCGGTTGGTAA

miRNA*
 ACCAACCCGGACTAAAGGGTG

mismatches: 3
bulges: 0
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pre-miRNA
 GCCAGCGGAGGGAGGGGCCTTTTCTCCCGGTTAGTGGCTCCATCCGGGACAAAAGGCCCAACCCTTTAGTCCCGGTTGGTAACACCAACCCGGACTAAAG
GGTGACCCTTTTGTCCCGATTGGTGGCACCAACCCGGACTAAAGGCCCCTCCACGTGATAGT

dot-bracket secondary structure
....(((...((((((((((((..(((.((((.(((.(((((..((((((((((((....((((((((((((.(((((((...))))))).)))))))))
)))...))))))))))))..))).))))).)))).)))..)))))))))))).)))......


SIMILARITIES
miRBase no hits

PMRD osa-miRf12027-akr: 0.000000000009

microPC no hits		UniProt no hits

RFAM MIR821: 0.0001		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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